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changing sample order 5-7 changing the module for a sample 5-5 cutting and pasting rows 5-8 fill down function 5-4 GeneScan defaults preferences 4-25 how to fill out DNA sequencing injection list 6-15 to 6-16 fragment analysis injection list 7-13 making multiple injections 5-5 preferences 4-24 to 4-26 preparing DNA sequencing 6-15 to 6-17 fragment analysis 7-13 to 7-16 Sequencing defaults preferences 4-24 installing capillary, on empty gel block 3-15 to 3-19 Cathode electrode 3-24 dye set/primer files 4-18 Internet address customer training information 1-13 Documents on Demand 1-12 L Leak Detect error 3-11 leaks polymer, checking for 3-11 to 3-13 syringe, correcting leaks at 3-12 LEDs (lights) service LEDs 2-5 status indicators 2-4 loading samples fragment analysis 7-8 sequencing 6-10 Log file, about 4-11 to 4-12 long-term shutdown 3-44 to 3-45 M maintenance autosampler calibrating, how to 3-5 calibrating, when to 3-4 cleaning, how to 3-4 cleaning, when to 3-4 homing, how to 3-6 homing, when to 3-6 buffer replacing, when to 3-10 storing 3-10 capillary window cleaning, how to 3-14 checking for polymer leaks 3-11 to 3-13 electrode cleaning, how to 3-23 cleaning, when to 3-23 polymer replacing, when to 3-10 resetting the instrument, when to 3-46 syringes Index-4 cleaning, how to 3-35 cleaning, when to 3-35 inspecting 3-37 water replacing, when to 3-10 maintenance, system See Also computer Manual Control window 4-6 to 4-7 editing a module 4-14 executing a function 4-7 starting a module 4-7 materials required DNA sequencing 6-7 fragment analysis 7-5 Matrix column DNA sequencing 6-12 matrix files 2-20 about 6-24, 7-22 creating DNA matrix from a sample 6-30 creating from matrix standards DNA sequencing 6-30 to 6-32 fragment analysis 7-25 to 7-29 errors 6-29, 6-31 number of files needed 6-24, 7-22 matrix standard samples, in sample sheet 7-10 matrix standards checking quality DNA sequencing 6-29 to 6-32 fragment analysis 7-27 to 7-29 denaturing the matrix standard samples fragment analysis 7-24 sequencing 6-26 DNA sequencing, part numbers B-4 fragment analysis, part numbers B-5 preparing standard samples DNA sequencing 6-25 fragment analysis 7-23 mobility files. See dye set/primer files modules editing 4-14 installing 4-18 pausing 4-7 selecting DNA sequencing 6-19 fragment analysis 7-18 starting 4-7 monitoring raw data 4-8 run of the instrument DNA sequencing 6-22 fragment analysis 7-20 O On/Off switch 2-6 P parameters voltage and time