Download footprintDB

Index
Index _________________________________________________________________________ 2
Introduction ____________________________________________________________________ 3
1.
footprintDB is a repository of databases _____________________________________________ 3
2.
Annotation of transcription factor interfaces _________________________________________ 4
3.
footprintDB is a search engine ____________________________________________________ 5
Web site navigation ______________________________________________________________ 6
1.
Sections ________________________________________________________________________ 6
2.
Navigation _____________________________________________________________________ 7
User registration ________________________________________________________________ 8
3.
Registration ____________________________________________________________________ 8
4.
Log In _________________________________________________________________________ 8
5.
Log out ________________________________________________________________________ 9
6.
Recover account info _____________________________________________________________ 9
7.
Modify account info_____________________________________________________________ 10
8.
Delete account _________________________________________________________________ 10
Searching _____________________________________________________________________ 11
1.
Search keywords _______________________________________________________________ 11
2.
Search DNA motifs _____________________________________________________________ 14
3.
Search protein sequences ________________________________________________________ 24
4.
Retrieve stored searches _________________________________________________________ 28
5.
Searching through the Web services interface _______________________________________ 29
Database insertion______________________________________________________________ 33
1.
Insert a new database into footprintDB ____________________________________________ 33
2.
footprintDB and TRANSFAC data formats _________________________________________ 34
3.
Manage own databases __________________________________________________________ 37
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