Download Samβada: User manual - LaSIG

RandomSample is a random set of 100 georeferenced points with two environmental variables and a molecular marker. The first environmental
parameter is random, while the second one is correlated to longitude in
order to provide some spatial autocorrelation. The molecular marker
is random.
SubsetSNPCattle contains 386 SNPs from Ugandan cattle [lien approprié]. They are already recoded for Samβada, so there is three binary
markers per loci. In this case, the spatial autocorrelation takes some
time to compute.
Provided you have the file tree shown on fig. 1, if you launch a shell1
and navigate to the folder RandomData or SubsetCattleSNP, examples can
be run using:
../../Binaries/Sambada.exe input-Sample100.txt Sample100.txt or
../../Binaries/Sambada.exe paramTest.txt TableEnvUG.csv extrait\_marq.txt
Sambada
Manual.pdf
Binaries
Sambada.exe
Supervision.exe
RecodePLINK.exe
Examples
DataFromManual
OneDataFile
combo-data.txt
param-combo.txt
...
TwoDataFiles
env-data.txt
mol-data.txt
param.txt
...
RandomData
input-Sample100.txt
Sample100.txt
SubsetCattleSNP
extrait_marq.txt
paramTest.txt
TableEnvUG.csv
Figure 1 – Suggested file tree to run the examples.
1
Command Line or PowerShell on Windows, Terminal on Mac OS and Linux, see p. 24.
3