Download QTLMap 0.8 User's guide

9.Simulate and design a new protocol ...............................................................................................27
10.Output files....................................................................................................................................29
10.1.Analysis report........................................................................................................................29
Configuration defined by the user.............................................................................................29
Description of the genealogy ..................................................................................................29
Description of the markers .......................................................................................................29
Description of the traits ............................................................................................................30
Parental phases..........................................................................................................................30
Genome scan.............................................................................................................................30
10.2.EQTL analysis report.............................................................................................................33
10.3.Analyse summary...................................................................................................................34
10.4.The family likelihood ............................................................................................................35
LRT Sires files .........................................................................................................................35
LRT Dams file ..........................................................................................................................35
LRT grid 2 QTL........................................................................................................................36
10.5.QTL effects estimations files ................................................................................................36
QTL Paternal effects.................................................................................................................36
QTL Maternal effect.................................................................................................................37
10.6.Parents phase report...............................................................................................................37
10.7.Haplotypes assigned from parents..........................................................................................37
10.8.Grand parental segment transmission marginal probabilities................................................38
10.9.Grand parental segment transmission joint probabilities.......................................................38
10.10.Simulation report..................................................................................................................39
10.11.Report simulations result......................................................................................................39
11.Reference........................................................................................................................................40
12.Appendix.......................................................................................................................................40
12.1.Parameter file Option Keys ...................................................................................................40
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