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6. Description The ECL Plex Western blotting system is optimized for single protein detection as well as multiplex protein detection using ECL Plex CyDye conjugated secondary antibodies and Hybond-LFP (low fluorescent PVDF membrane), or Hybond-ECL (nitrocellulose membrane). The optimized antibodies show high sensitivity, a very good dynamic range and low or no cross reactivity. The CyDye technology is safe and reliable and ensures accurate quantification. The system is optimized on the Typhoon scanner but is compatible with many fluorescent laser scanners and CCD cameras (see section 7). The ECL Plex Fluorescent Rainbow markers is a mixture of individually colored proteins of defined size. Purified proteins are combined to produce bands of equal color intensity and even spacing when separated on a polyacrylamide gel. The visibility of the individual marker bands in the Cy3 or Cy5 can vary and depend on the primary antibodies used. 13