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List of PROTAX functions Perl scripts get_reference_sequences_all.pl get_reference_sequences_random.pl get_reference_sequences_clustering.pl generate_training_data.pl compact_training_data.pl get_deleteseqs.pl create_xdata_seqsimfile.pl create_xdata_BLAST.pl create_xdata_TIPP.pl tipptrain.pl classify_seqsimfile.pl classify_BLAST.pl classify_TIPP.pl classify_BLAST_TIPP.pl nodeprob_seqsimfile.pl nodeprob_BLAST.pl nodeprob_TIPP.pl nodeprob_BLAST_TIPP.pl add_taxonomy_info.pl correct_path.pl correct_levels.pl R functions read.xdata merge.xdata initialize.adaptation adaptiveMCMC write.postparams traceplot.one traceplot.all amcmc.diagnostic.plot accuracy.plot 22