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2. How to run ColSpace Extract the zip file into any directory you want. Then use command line tool to enter that directory, and type the following command: java -jar colspace_0_3.jar The GUI should appear without any problem. It looks somewhat similar to this: Figure 2: ColSpace default user interface In some systems, you can skip the step of typing command line. Instead, you simply double-click the jar file. However, this approach seems to work only on versions prior to JDK 1.6. Command line is recommended. -3-