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1 Introduction This document provides a complete description of the functionality available in the MarkerView™ Software. The document describes all of the available menu items, toolbar buttons, pane types and so forth. While some motivation is given for the actual utility of the various features, this document focuses primarily on describing how the various features work. If you are new to the program it is strongly recommended that you begin with the accompanying User Manual. That document uses a tutorial approach to walk you through the most important parts of the program, commenting extensively on the underlying rationale for the various operations. As its name implies, this document is intended as a reference. The appendix in section 6 describes to utility applications which are included with the software. Section 7 contains a high-level introduction to principal components analysis. For the benefit of those familiar with version 1.0 or 1.1 of the program, another appendix (section 8) lists the new features added with version 1.2.1. Note – If you are reading an electronic version of this document, the section numbers appearing in gray text (for example 1) are links which you can click to jump to the referenced section; this also applies to the lines of the Table of Contents. MarkerView™ 1.2.1 Software Reference Manual -7- Revision: February, 2010