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Few studies have been realized in Yucatan Peninsula and specifically the ichthyofauna community in “Bocas de Dzilam” Reserve has not been assessed (Vega-Cendejas et al. 1993, Vega-Cendejas et al. 1994, Vega-Cendejas et al. 220). Because of its reserve status and to its ecological importance for estuarine ichthyofauna, this research aims to investigate fish assemblages distribution related to climatic season and some hydrologic variables. Study area. “Bocas de Dzilam” lagoon declared a protected natural area since 1989 (Zone of Ecological Conservation, Reserve of Dzilam), is located in Southeastern Mexico in the central coast of Yucatan State (21° 19’ - 21° 32’ N, 88° 35’ - 88° 58’ W) with a surface of 9.4 km2, 12.9 km long, a maximum width of 1.65 km with a permanent connection with the sea (375 m wide), bordered by mangrove, and depth 1 - 2.5m, with 80% of the bottom covered by macrophytes, dominated mainly by Halodule wrightii and Ruppia maritima (Herrera-Silveira et al. 1998, Medina-Gómez and Herrera-Silveira 2003). It is featured by the presence of subterranean flows and springs giving it a special nature by the presence of ecotones regulated by fresh and salty water. MATERIALS AND METHODS Six bimonthly samplings including fish and physical variables were performed from May 2003 to March 2004 during climate seasons of rain (July -September), northern cold fronts “norths” (November - January) and dry (May - March) along 8 stations distributed in different environments. Fish sampling was realized with a beach seine (15 m x 1.5 m; 2.5 cm mesh size), hauls by duplication covering an average area of 240 m2. Prior collection, physicochemical variables were measured in situ (temperature, salinity and dissolved oxygen) using a Yellow Springs Instrument (model 85). Fish were preserved in 10% formalin, identified, counted, and measured for standard length to the nearest mm. 90 Data Analysis: Spatial and temporal differences in salinity, temperature and dissolved oxygen, were subjected to different variance analysis of two ways variance analysis (ANOVA), normality and homogeneity standards of variances were double-checked by Kolgomorov-Smirnov and Bartlett tests, respectively. Density and biomass were determined as the number and weight of organisms per unit area (ind/m2, g/m2), extrapolated to 10m2. Spatial and temporal differences in density and biomass were determined by two ways analysis of variance after transforming data to log (x+1) and verifying homocedasticity. For this last analysis, extremely abundant species were eliminated (Clarke and Warwick 2001, Tsou and Matheson 2002). Community structure was analyzed through richness (S), evenness (J) and diversity of species (H’) using Shannon-Wiener index. Dominance implying hierarchical structuring and evaluation of relative specie importance, was carried out in each zone and on annual basis with Index of Value of Importance (IVI), which incorporates information about density (DR), frequency (FR) and relative biomass (BR) for each species (IVI = DR + FR + BR) (Brower and Zar 1977). Spatial and temporal changes in assemblage ecological parameters were performed with statistical program PRIMER 5, Plymouth Routines in Multivariate Ecological Research (Clarke and Gorley 2001). Fish assemblage differences among sites and/or climatic seasons were tested by Similarity analysis (ANOSIM) non-parametric test that applies the Bray Curtis similarity matrix (Clarke and Green 1988). Species contribution by climate season or sampling station was evaluated with similarity percentage (SIMPER) test, which determines percentage contribution of each species in order to classify a group (similarity) and discriminate species among sample groups (dissimilarity) (Clarke and Green 1988). Redundancy Analysis (RDA) was used to evaluate the interrelation among media densities and environmental parameters. This multi-varied analysis and IVI were performed with the statistical program ANACOM (De la Cruz 1994). Spearman Rev. Biol. Trop. (Int. J. Trop. Biol. ISSN-0034-7744) Vol. 57 (1-2): 89-103, March-June 2009