Download EMBOSS user's guide : practical bioinformatics

CONTENTS
Major components
Sub-components
2.6.1
2.6.2
Differences between CVS and stable versions
2.6.3
2.7
14
14
Installation
2.7.1
Overview of the installation process
2.7.2
2.7.4
Configuration 16
Compilation 17
Setting your PATH
2.7.5
Testing
2.7.6
Database setup
2.7.7
Installing EMBASSY packages
2.7.3
2.8
15
16
all is well
Maintenance
16
18
18
19
20
22
2.8.2
Using CVS to update 22
Bug-fix replacement files 23
2.8.3
Patch files
2.8.4
Automated installation of EMBOSS and EMBASSY
2.8.5
Automated database
2.8.1
24
started
3
Getting
3.1
Application documentation
28
3.1.1
Online documentation
3.1.2
AJAX
3.1.3
Interfaces
3.2
26
updating
28
28
command definition
(ACD) language
29
29
3.2.2
Navigating the application documentation 29
Navigating the tabular documentation 29
Sections in the application documentation
29
3.3
How to contribute
3.2.1
30
EMBOSS coordination meetings
Collaborations
31
3.3.1
3.3.2
3.4
3.4.1
3.4.2
3.4.3
Project mailing lists 31
User mailing list 31
Developer mailing list 32
Announcements mailing list
3.4.4
3.5
Mail archives
How to get
help
33
EMBOSS documentation
3.5.2
EMBOSS
3.5.4
3.6
3.6.1
33
frequently asked questions 33
Asking for help
33
Suggesting new features and applications
Reporting bugs and problems 35
Where to send a bug report
35
3.6.2
Before you send a bug report
35
How to write a bug report
35
3.6.3
3.7
32
32
3.5.1
3.5.3
31
EMBOSS training
3.7.1
EMBOSS tutorial
3.7.2
EMBOSS
3.7.3
EMBOSS
VI
35
36
developer's course
workshops 36
36
34
25