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Brian Documentation, Release 1.4.1 Original Brian script A script in Brian: ''' Very short example program. ''' from brian import * from time import time N=10000 # number of neurons Ne=int(N*0.8) # excitatory neurons Ni=N-Ne # inhibitory neurons p=80./N duration=1000*ms eqs=''' dv/dt = (ge+gi-(v+49*mV))/(20*ms) : volt dge/dt = -ge/(5*ms) : volt dgi/dt = -gi/(10*ms) : volt ''' P=NeuronGroup(N,model=eqs, threshold=-50*mV,reset=-60*mV) P.v=-60*mV+10*mV*rand(len(P)) Pe=P.subgroup(Ne) Pi=P.subgroup(Ni) Ce=Connection(Pe,P,'ge',weight=1.62*mV,sparseness=p) Ci=Connection(Pi,P,'gi',weight=-9*mV,sparseness=p) M=SpikeMonitor(P) trace=StateMonitor(P,'v',record=0) t1=time() run(1*second) t2=time() print "Simulated in",t2-t1,"s" print len(M.spikes),"spikes" subplot(211) raster_plot(M) subplot(212) plot(trace.times/ms,trace[0]/mV) show() Equivalent in pure Python The script above translated into pure Python (no Brian): ''' A pure Python version of the CUBA example, that reproduces basic Brian principles. ''' from pylab import * from time import time from random import sample from scipy import random as scirandom 11.2. Simulation principles 347
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