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References
[1] Milo,M., Niranjan,M., Holley,M.C., Rattray,M. and Lawrence,N.D. (2004) A probabilistic approach for summarising oligonucleotide gene expression data. Technical
report available upon request.
[2] Liu,X., Milo,M., Lawrence,N.D. and Rattray,M. (2005) A tractable probabilistic
model for Affymetrix probe-level analysis across multiple chips. Bioinformatics,
21:3637-3644.
[3] Sanguinetti,G., Milo,M., Rattray,M. and Lawrence, N.D. (2005) Accounting for
probe-level noise in principal component analysis of microarray data. Bioinformatics, 21:3748-3754.
[4] Rattray,M., Liu,X., Sanguinetti,G., Milo,M. and Lawrence,N.D. (2006) Propagating
uncertainty in Microarray data analysis. Briefings in Bioinformatics, 7:37-47.
[5] Liu,X., Milo,M., Lawrence,N.D. and Rattray,M. (2006) Probe-level measurement
error improves accuracy in detecting differential gene expression. Bioinformatics,
22:2107-2113.
[6] Liu,X., Lin,K.K., Andersen,B., and Rattray,M. (2006) Including probe-level uncertainty in model-based gene expression clustering. BMC Bioinformatics, 8(98).
[7] Peter Spellucci. DONLP2 code and accompanying documentation. Electronically
available via http://plato.la.asu.edu/donlp2.html.
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