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Commands and their use The input consists of a sequence of comments, commands and directives. The commands are headed by '%' character and directives must follow the related command. Sir2004 recognizes the following commands: %INITIALIZE Initialize the direct access file (to override previous results and data) %DATA Data input routine %INVARIANTS Invariants routine %PHASE Phasing routine + Direct Space Refinement routine %END End of the input file %JOB A caption is printed in the output %CONTINUE The program runs in default conditions from the last given command up to the end %STRUCTURE string This command is used to specify the name of the structure to investigate. The program creates the name of some needed files, adding the appropriate extension to the structure name. The file names are: string.bin -> direct access file string.res -> file in SHELX frmat string.plt -> file for graphics 21