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Download Alamut Batch 1.4 User Manual
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Alamut Batch 1.4 User Manual phyloP Output phyloP All coding substitutions WT AA (1 letter) wtAA_1 WT AA (3 letters) wtAA_3 WT codon wtCodon WT codon frequency wtCodonFreq Variant AA (1 letter) varAA_1 Variant AA (3 letters) varAA_3 Variant codon varCodon Variant codon frequency varCodonFreq AA Position posAA Missense only Number of orthologues in alignment nOrthos Number of conserved residues in alignment conservedOrthos Most distant species in which AA is conserved conservedDistSpecies BLOSUM45 BLOSUM45 BLOSUM62 BLOSUM62 BLOSUM80 BLOSUM80 WT AA composition wtAAcomposition Variant AA composition varAAcomposition WT AA polarity wtAApolarity Variant AA polarity varAApolarity WT AA volume wtAAvolume Variant AA volume varAAvolume Grantham distance granthamDist AlignGVGD class AGVGDclass AlignGVGD: variation (GV) AGVGDgv AlignGVGD: deviation (GD) AGVGDgd SIFT prediction SIFTprediction © Interactive Biosoftware 24/29 July 2015
