Download Biomedical Genomics Workbench

CHAPTER 4. GETTING STARTED
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Figure 4.28: Select your adapter trim list. You can use the default trim parameters or adjust them
if necessary.
Figure 4.29: Check the settings and save your results.
4.4.5
Output from the Prepare Overlapping Raw Data and Prepare Raw Data workflows
Different outputs are generated from the "Prepare Overlapping Raw Data" and "Prepare Raw
Data" workflows.
Prepare Overlapping Raw Data. Performs quality control and trimming of the sequencing reads
and merging of overlapping read pairs and generates five different outputs:
1. QC graphic report. The report should be checked by the user.
2. QC supplementary report. The report should be checked by the user.
3. Trimming report (the trimmed sequences are automatically used as input in the merging of
paired reads step). The report should be checked by the user.
4. Merged reads output. Use as input together with the "Not merged reads output" in the next
ready-to-use workflow (e.g. "Identify Variants WES").