Download Interpret software - Oxford Gene Technology

Oxford Gene Technology
Chi-squared test
Fisher exact test (2 tailed).
A Fisher exact test will be used if in the contingency table an expected value is below 10, otherwise
a Chi squared test will be used.
Click „Export‟ and a .txt file will be generated with the following metrics:
1. Chromosomal position of selected genomic region.
2. Start position of selected genomic region
3. Stop position of selected genomic region.
4. Number of aberrations in the selected genomic region
5. Number of losses in the selected genomic region
6. Number of gains in the selected genomic region
7. Mean aberration frequency in the selected genomic region
8. Mean loss frequency in the selected genomic region
9. Mean gain frequency in the selected genomic region
10. Identity of the second selected group
11. P value for aberration frequency in the selected genomic region compared to a second selected
group.
11. P value for a loss frequency in the selected genomic region compared to a second selected
group
12. P value for a gain frequency in the selected genomic region compared to a second selected
group
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Version 11
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