Download Vector NTI® Express Software User Guide

Transcript
16
Contig Assembly using ContigExpress
View the assembly
Rename a contig
To rename a contig, right‐click on the contig name in the list and select Edit. Enter a new name in the dialog box.
View the assembly
Click on contig name in the Contig/Fragment List to display the assembly in the Contig Viewer.
Contig Viewer Graph Pane
Click on contig name in tree
Contig Viewer Alignment pane
The Contig Viewer contains two panes:
• The Graph Pane displays a graphical representation of the contig assembly
• The Alignment Pane shows the assembled fragment sequences, chromatogram data, and translated sequence.
Contig Viewer
Graph Pane
166
The Contig Viewer Graph Pane contains horizontal arrows representing the relative positions of the fragments forming the contig. The arrowheads indicate whether the respective fragment is in the direct or complementary strand, with the names of the fragments displayed above the fragment lines.
Vector NTI® Express Software User Guide