Download FCModeler User`s Manual

Table of Contents
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2
3
4
5
6
7
8
Introduction to FCModeler ..................................................................................................... 1
Setting Up FCModeler............................................................................................................ 1
2.1
Setting up the FCModelerConfig File............................................................................. 1
2.2
Running FCModeler ....................................................................................................... 1
Sources of Input ...................................................................................................................... 1
3.1
Graph XML Files............................................................................................................ 1
3.1.1
XML Format ........................................................................................................... 1
3.1.2
Example of a Complete XML File.......................................................................... 5
3.1.3
Opening a Graph XML File.................................................................................... 6
3.1.4
Saving a Graph XML File....................................................................................... 7
3.1.5
Saving a JPEG Image of the Graph ........................................................................ 8
3.2
MySQL Database............................................................................................................ 8
Graph Layout .......................................................................................................................... 8
4.1
Simple Dot Layout.......................................................................................................... 8
4.2
Rank-Cluster Dot Layout................................................................................................ 9
4.2.1
Layout XML File .................................................................................................... 9
4.3
GEM Layout(s) ............................................................................................................. 10
Interacting with the Graph View........................................................................................... 12
5.1
Selecting Node and Edge Figures ................................................................................. 12
5.2
Node Figures................................................................................................................. 13
5.2.1
Adding................................................................................................................... 13
5.2.2
Deleting................................................................................................................. 13
5.2.3
Moving.................................................................................................................. 13
5.3
Edge Figures ................................................................................................................. 13
5.3.1
Adding................................................................................................................... 14
5.3.2
Modifying ............................................................................................................. 14
5.3.3
Deleting................................................................................................................. 14
5.3.4
Moving.................................................................................................................. 14
5.4
Zooming........................................................................................................................ 15
5.5
Panning ......................................................................................................................... 15
5.6
Finding a Particular Node ............................................................................................. 15
Mappings............................................................................................................................... 15
6.1
Node and Edge Properties............................................................................................. 15
6.1.1
Property Viewer .................................................................................................... 16
6.2
Visual Attributes of Node and Edge Figures ................................................................ 17
6.3
Using Visual Attributes to Visualize Properties ........................................................... 17
6.4
Creating Mappings Using the Mapping Editor............................................................. 18
Animation ............................................................................................................................. 19
7.1
XML File Format.......................................................................................................... 19
7.2
Controls......................................................................................................................... 21
Graph Theoretic Operations.................................................................................................. 21
8.1.1
Subgraph Creation ................................................................................................ 21
8.1.2
Strongly Connected Components ......................................................................... 22
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