Download CD-HIT User's Guide

1. Introduction
2. Algorithm
2.1.
cd-hit clustering algorithm
2.2.
algorithm limitations
2.3.
cd-hit-2d comparing algorithm
2.4.
DNA/RNA clustering & comparing
2.5.
psi-cd-hit algorithm
3. User’s Guide
3.1.
installation
3.2.
cd-hit
3.3.
cd-hit-2d
3.4.
cd-hit-est
3.5.
cd-hit-est-2d
3.6.
cd-hit-para.pl, cd-hit-2d-para.pl
3.7.
psi-cd-hit.pl
3.8.
psi-cd-hit-2d.pl
3.9.
incremental clustering
3.10.
hierarchically clustering
4. CD-HIT tools
4.1.
plot_len.pl
4.2.
clstr_sort.pl
4.3.
clstr_merge.pl
4.4.
clstr_renumber.pl
4.5.
clstr_rev.pl
5. FAQ
6. References