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1 Introduction 1.3 Software functionality MaxFilter 2.0 software provides three separate programs: MaxFilter The main application for doing Maxwell filtering called from a command line. This program includes also MaxST and MaxMove functions. MaxAve Off-line version of the on-line averager, provided for convenient re-averaging of raw data before or after Maxwell filtering. MaxFilter_GUI Graphical user interface program which collects the input arguments, and then starts MaxFilter or MaxAve as a subprocess. Information of the data processing is displayed on the main display and in a log window. The main functions of MaxFilter are: Software shielding By subtracting the component b out from measured signals b , the program performs software shielding on the measured MEG data. Automated detection of bad channels By comparing the reconstructed sum b in + b out with measured signals b , the program can automatically detect if there are MEG channels with bad data that need to be excluded from Maxwell filtering. Spatio-temporal suppression of S T -space artifacts By subtracting the reconstructed waveforms b in ( t ) + b out ( t ) from measured signals b ( t ) , the program can identify and suppress artifact waveforms which arise in the S T -space. Transformation of MEG data between different head positions By transforming the component b in into harmonic amplitudes (i.e. virtual channels), MEG signals in a different head position can be estimated easily. Compensation of disturbances caused by head movements By extracting head position indicator (HPI) signals applied continuosly during a measurement, the data transformation capability is utilized to estimate the corresponding MEG signals in a static reference head position. 8 2006-10-31 NM21993A