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Appendix C Formats for import and export C.1 List of bioinformatic data formats Below is a list of bioinformatic data formats, i.e. formats for importing and exporting molecule structures, sequences, alignments and trees. C.1.1 Molecule structure formats File type PDB Tripos Mol2 MDL Mol CLC C.1.2 Suffix .pdb .mol2 .sdf .clc Description Import X X X X Export X Rich format including all information Import X Export X X X Description Rich format including all information Annotations in csv format Simple format, name & description Rich information incl. annotations Only sequence (no name) Simple format. One seq per line: name, description(optional), sequence Annotations in tab delimited text format X Sequence data formats File type CLC CSV export FASTA GCG sequence Raw sequence Suffix .clc .csv .fsa/.fasta .gcg any Sequence Comma separated values .csv Tab delimited text .txt X X X X X X 186
