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J-Express Pro User’s Manual
The HTML page generated contains the time/date the page was generated, an image of the
graph, and a list of all profiles that that are shown in the graph. If Shadow Unselected is
active then the selected profiles will be shown in bold typeface in the list.
Zooming a graph:
To zoom in on an area of interest in a graph, click the Zoom in button ( ), and drag out
the area you want to zoom in on. A new tab will be created in the Gene graph window
containing the zoomed view. To dispose of the zoom tabs, click the Remove component
button ( ).
Move:
J-Express Pro User’s Manual
Printing a graph:
To print graphs simply press the button (Print) on the Gene Graph toolbar, or select
Image|Print from the Gene Graph menu bar. Note: it is recommended to print graphs
using the Landscape paper orientation, since graphs usually are larger horizontally.
Consult your printer and/or operating system manual for information on how to print using
Landscape paper orientation.
Customizing the appearance of the Gene Graph:
Right clicking on the graph or selecting Line Chart|Chart Layout will bring up the Plot
Properties dialog. Here you can alter most visual aspects of the Gene Graph.
The move button ( ) enables you to grab the graph window using the mouse cursor
instead of using the scrollbars (if the graph is too big to fit in the window).
Create Group:
The Create Group ( ) button will create a group containing the selected genes that
can be managed further from the Group Controller (see section 3.1.14).
Repaint Component:
If changes you make do not take effect immediately, press the Repaint Component (
) button or select Line Chart |
Update and Repaint
Copy image to Clipboard:
To copy the image in any of the tabs to clipboard, click the
button.
Put in Tree:
To place the entire component into the project tree select Line Chart|
Put in
Tree from the menu bar. This creates a new node in the project tree that acts as a
direct shortcut to the current component.
Color Mode
Plot Properties dialog.
The Fill menu allows you to choose the appearance of the background of the plot. The
various options are:
•
One Color – Single color is used for the background. Click the colored square to
the right of the menu to choose the desired color.
•
Gradient – Two colors are combined to create a smooth color gradient. Click the
two colored boxes to choose the desired colors. Use the Gradient Type menu to
select the type of gradient. Diagonal forms a color gradient from the upper left to
the lower right corner; Top-Bottom forms a color gradient from the top of the plot
to the bottom.
•
External Picture – Use the file selection dialog to select the image file you wish to
use as a background for the plot. Selecting Stretch will stretch the image to fit the
plot. Selecting Tile will repeat the image in a tile pattern if it is to small to cover
the entire plot.
•
Tiles – Six additional patterns you can use for your plots.
Full color Mode - will display all component and group colors in the set color.
Black and White Mode - will display component and group colors in a shade of
grey.
Saving a graph as an image:
To save a graph as a separate image file click the button (Save chart) on the Gene
Graph tool bar, or select Image|Save from the Gene Graph menu bar. In the file location
dialog that appears, locate the folder you want to save the image of the graph, enter a
filename, select the appropriate file extension, and click OK.
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