1
Download User manual CLC Server Command Line Tools
Transcript
CHAPTER 3. EXAMPLE SCRIPT
echo ""
echo "Export SNP table to excel"
$SERVERCMD -A export -e excel_2010 -d . ${snptable} -O snp_export_result.txt
check_return_code "Export SNP table to excel"
snpfile=‘$PARSECMD -f snp_export_result.txt‘
rm snp_export_result.txt
# Workflow completed
echo "Workflow completed succesfully"
echo "dip_detection result: ${dipfile}"
echo "snp_detection result: ${snpfile}"
16
