Download JoinMap 4 Manual

58
help menu 15
heterogeneity 22
heterogeneity test details tabsheet 22
heterogeneity test tabsheet 22
highlight errors 4, 16
homologs 28
independence lod 18
independence p-value 18
individual genot. freq. tabsheet 17
individuals tabsheet 5, 17
info on tabsheet contents 5, 15
info tabsheet 5, 17, 19, 23
information button 5
initial acceptance probability 26
installation 2
integration 22
invert map 10
jmd 15
jmp 15
joinmap.lic 2
jump 9, 24
jump threshold 24
key combinations 13
kosambi 25
layout 45
length of names 2
license file 2
likelihood 25
limits 2
line-structured 45
linkage group 1
linkage lod 19
linkage phase 18, 21, 47, 48, 49
linkages 9, 21, 22
load data 4, 15
loc-file 15, 17, 45, 46
loci tabsheet 5, 9, 17, 19, 21
locus genot. freq. tabsheet 5, 10, 17, 28
locus genotype file 15, 45, 46
locus genotype frequencies 6, 50
locus name 2
lod score 18
lod threshold 24
-log10(p) 28
map (text) tabsheet 27
map chart 1, 10, 27
map chart options 15
map chart tabsheet 10, 27
map file 15, 45, 53
map integration 22
map node 9, 16, 27
map tabsheet 27
Index
mapmaker 11, 15, 45
mapping algorithm 1, 23
mapping function 25
mapping node 9, 23
mapping procedure 23
maximum likelihood mapping 25
maximum linkages tabsheet 21
mean chisquare contribs. tabsheet 10, 28
mean number of recombinations 26
memory 2
metropolis algorithm 29
ml algorithm map node 29
ml mapping 10, 25
monte carlo 25
monte carlo em cycle 26
move selected loci 20
multiple checkbox setting 14
n.n. fit 10, 25, 28, 29
n.n. stress 10, 29
name-instruction 46, 51
navigation panel 3, 13
navigation tree 3, 13, 15
nearest neighbour fit 25, 28, 29
nearest neighbour stress 29
negative distance 9, 24
new project 3
nind-instruction 46
nloc-instruction 46
no data 5
node
chart 5, 30
combined group 23
dataset 4, 16
group 3, 8, 21, 22
grouping 8, 19
map 9, 16, 27
mapping 9, 23
ml algorithm map 29
plain map 27
population 3, 4, 15, 17, 19
project 3, 15
regression algorithm map 28
not effective 21
nr 14
number of map optimization rounds 26
optional classification types 51
page setup 5, 14
pairs tabsheet 19, 22
pairwise data file 15, 45, 51
pairwise data population 15, 19, 22
pdf file 2, 14
phase type 47, 48, 49