Download CLC Sequence Viewer

INDEX
create tree, 185
create trees, 185
features, 184
label settings, 192
minimap, 190
neighbor joining, 188
node right click menu, 196
.oa4, file format, 208
node settings, 191
Open
tree layout, 190
consensus sequence, 179
tree settings, 189
from clipboard, 79
UPGMA, 188
Open reading frame determination, 160
.pir, file format, 208
Open-ended sequence, 161
PIR (NBRF), file format, 207
Order primers, 202
Plugins, 16
ORF, 160
.png-format, export, 93
Organism, 121
Polarity colors, 111
Originates from, 99
Portrait, Print orientation, 75
Overhang, find restriction enzymes based on, Positively charged residues, 152
166, 168, 173
PostScript, export, 93
Preference group, 70
.pa4, file format, 208
Preferences, 64
Page heading, 76
advanced, 69
Page number, 76
export, 69
Page setup, 75
General, 64
Parameters
import, 69
search, 139
style sheet, 70
Partition function, 202
toolbar, 66
Paste
View, 66
text to create a new sequence, 79
view, 53
Paste/copy, 96
Primer
Pattern discovery, 202
design, 202
PCR primers, 202
design from alignments, 202
.pdb, file format, 127, 208
Print, 73
.seq, file format, 208
preview, 76
PDB, file format, 208
visible area, 74
.pdf-format, export, 93
whole view, 74
Personal information, 14
.pro, file format, 208
Pfam domain search, 201
Problems when starting up, 14
.phr, file format, 208
Processes, 57
Phred, file format, 207
Properties, batch edit, 45
.phy, file format, 208
Protein
Phylip, file format, 208
charge, 201
Phylogenetic tree, 185, 202
Isoelectric point, 150
Phylogenetic tree methods, 187
report, 200
Phylogenetic trees
statistics, 149
background settings, 193
Proteolytic cleavage, 201
bootstrap settings, 195
Proxy server, 19
bootstrap tests, 189
.ps-format, export, 93
branch layout, 194
Non-standard residues, 111
Nucleotides
UIPAC codes, 212
Numbers on sequence, 109
.nwk, file format, 208
.nxs, file format, 208
220