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CHAPTER 7. TARGETED AMPLICON SEQUENCING (TAS)
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Figure 7.28: Select your target region track.
Figure 7.29: Specify setting for removal of germline variants.
8. Click on the button labeled Next and once again select the target region track (the same
track as you have already selected in previous wizard steps). (figure 7.30).
In the next wizard step you must once again select your target regions track. This time
you specify the track to be used for quality control of the targeted sequencing as this tool
reports the performance (enrichment and specificity) of a targeted re-sequencing experiment
(figure 7.31).
In the next wizard step you can check the selected settings by clicking on the button labeled
Preview All Parameters (figure 7.32).
In the Preview All Parameters wizard you can only check the settings, and if you wish to
make changes you have to use the Previous button from the wizard to edit parameters in
the relevant windows. At the bottom of this wizard there are two buttons regarding export
functions; one button allows specification of the export format, and the other button (the