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Download Mandatory qualifiers
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[ Team LiB ] maskseq maskseq allows you to mask off regions of a sequence with a specified letter. To mask off bases 10 to 12 from a sequence gatta.seq and write to the new sequence file gatta2.seq: % maskseq gatta.seq gatta2.seq -reg=10-12 To mask off bases 20 to 30 from a sequence hdh.seq using the character n and write to the new sequence file hdh2.seq: % maskseq hdh.seq hdh2.seq -reg=20-30 -mask=n To mask off the regions 20 to 23, 34 to 45 and 88 to 90 in yuy.seq: % maskseq yuy.seq yuy2.seq -reg=20-23,34-45,88-90 Mandatory qualifiers: [-sequence] (sequence) Sequence USA. -regions (range) Regions to mask. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-digit, non-alpha character. Examples of region specifications are: 2445 , 56-78, 1:45, 67=99, 765..888, and 1,5,8,10,23,45,57,99. [-outseq] (seqout) Output sequence USA. Optional qualifiers: -maskchar (string) Character to use when masking. Default is X for protein sequences, and N for nucleic sequences. [ Team LiB ]
