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Section 2.4. GenBank/DDBJ Field Definitions Section 2.5. EMBL Example Flat File Section 2.6. EMBL Field Definitions Section 2.7. DDBJ/EMBL/GenBank Feature Table Section 2.8. References Chapter 3. SWISS-PROT Section 3.1. SWISS-PROT Example Flat File Section 3.2. SWISS-PROT Field Definitions Section 3.3. SWISS-PROT Feature Table Section 3.4. References Chapter 4. Pfam Section 4.1. Pfam Example Flat File Section 4.2. Pfam Field Definitions Section 4.3. References Chapter 5. PROSITE Section 5.1. PROSITE Example Flat File Section 5.2. PROSITE Field Definitions Section 5.3. References Part II: Tools Chapter 6. Readseq Section 6.1. Supported Formats Section 6.2. Command-Line Options Section 6.3. References Chapter 7. BLAST formatdb blastall megablast blastpgp PSI-BLAST PHI-BLAST bl2seq Section 7.1. References Chapter 8. BLAT Section 8.1. Command-Line Options Section 8.2. References Chapter 9. ClustalW Section 9.1. Command-Line Options Section 9.2. References Chapter 10. HMMER