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Chapter 11
Online database search
Contents
11.1 GenBank search . . . . . . . . . . . . . . . . .
11.1.1 GenBank search options . . . . . . . . .
11.1.2 Handling of GenBank search results . . .
11.1.3 Save GenBank search parameters . . . .
11.2 UniProt (Swiss-Prot/TrEMBL) search . . . . .
11.2.1 UniProt search options . . . . . . . . . .
11.2.2 Handling of UniProt search results . . . .
11.2.3 Save UniProt search parameters . . . . .
11.3 Search for structures at NCBI . . . . . . . . .
11.3.1 Structure search options . . . . . . . . .
11.3.2 Handling of NCBI structure search results
11.3.3 Save structure search parameters . . . .
11.4 Sequence web info . . . . . . . . . . . . . . .
11.4.1 Google sequence . . . . . . . . . . . . .
11.4.2 NCBI . . . . . . . . . . . . . . . . . . . .
11.4.3 PubMed References . . . . . . . . . . . .
11.4.4 UniProt . . . . . . . . . . . . . . . . . . .
11.4.5 Additional annotation information . . . . .
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CLC Protein Workbench offers different ways of searching data on the Internet. You must be
online when initiating and performing the following searches:
11.1
GenBank search
This section describes searches for sequences in GenBank - the NCBI Entrez database.
NCBI search view is opened in this way (figure 11.1):
Search | Search for Sequences at NCBI (
or Ctrl + B (
+ B on Mac)
This opens the following view:
148
)
The