Download Desmond Users Guide - Gemini Computing Cluster

Desmond Users Guide, Release 3.4.0 / 0.7.1
J. L. Klepeis, I. Kolossvary, M. A. Moraes, F. D. Sacerdoti, J. K. Salmon,
Y. Shan, and D. E. Shaw. Scalable algorithms for molecular dynamics
simulations on commodity clusters. Proceedings of the 2006 ACM/IEEE
Conference on Supercomputing (SC06), Tampa, FL, 11 to 17 November 2006
(ACM Press, New York, 2006)."
5. Disclaimer of Warranties and Liabilities. LICENSEE acknowledges that the
SOFTWARE is a research tool. The SOFTWARE is provided "as is." For the
avoidance of doubt, DESRES and its licensors shall have no maintenance,
upgrade, or support obligations with respect to the SOFTWARE. DESRES, ITS
AFFILIATES, AND ITS LICENSORS DISCLAIM ALL WARRANTIES, EXPRESS OR IMPLIED,
INCLUDING WITHOUT LIMITATION ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
PARTICULAR PURPOSE, TITLE, AND NON-INFRINGEMENT, OR THAT THE SOFTWARE WILL
OPERATE UNINTERRUPTED OR ERROR-FREE OR MEET LICENSEE’S PARTICULAR
REQUIREMENTS. LICENSEE AGREES THAT DESRES AND ITS AFFILIATES SHALL NOT BE
HELD LIABLE FOR ANY DIRECT, INDIRECT, SPECIAL, CONSEQUENTIAL, EXEMPLARY,
PUNITIVE, OR INCIDENTAL DAMAGES WITH RESPECT TO ANY CLAIM BY LICENSEE OR ANY
THIRD PARTY ARISING OUT OF OR RELATING TO THIS AGREEMENT OR USE OF THE
SOFTWARE OR ANY DERIVATIVE WORK BASED ON THE SOFTWARE.
6. Ownership Rights. LICENSEE acknowledges that the SOFTWARE is the sole and
exclusive property of, and is valuable, confidential, and proprietary to,
DESRES and its licensors, including, without limitation, all rights to
patents, copyrights, trademarks, trade secrets, and any other intellectual
property and proprietary rights inherent therein or appurtenant thereto, in
all media now known or hereinafter developed, and LICENSEE shall protect the
foregoing to at least the same extent that it protects its own confidential
information, but using no less than a reasonable standard of care. LICENSEE
is not purchasing title to the SOFTWARE or copies thereof, but rather is being
granted only a limited license to use the SOFTWARE only in accordance with
this Agreement. LICENSEE shall not use DESRES or its affiliates or licensors’
names or marks or employee names, or adaptations thereof, in any advertising,
promotional, sales, or other materials without the prior written consent of
DESRES or, if and as applicable, of DESRES’s affiliates or licensors.
LICENSEE shall inform DESRES promptly in writing of any actual or alleged
infringement of DESRES or its licensors’ rights and of any available evidence
thereof.
7. Term and Termination. LICENSEE’s license with respect to the SOFTWARE
shall be perpetual, subject to DESRES’s rights to terminate this Agreement.
Any and all rights granted to LICENSEE hereunder shall terminate immediately
upon LICENSEE’s breach of, or non-compliance with, any provisions of this
Agreement. In the event of any termination of this Agreement for any reason,
LICENSEE shall discontinue all use of the SOFTWARE and shall either (a)
promptly return all copies of the SOFTWARE and any RELATED MATERIALS to
DESRES, or (b) subject to DESRES’s prior consent, provide DESRES with a
certificate of destruction of all copies of the SOFTWARE and any RELATED
MATERIALS. Notwithstanding the foregoing, only Paragraph 1 of this Agreement
shall not survive the termination of this Agreement.
8. Government Use. The SOFTWARE and the accompanying documentation are
"commercial items" as that term is defined in 48 C.F.R. 2.101 consisting of
"commercial computer software" and "commercial computer software
documentation" as such terms are used in 48 C.F.R. 12.212. Consistent with 48
C.F.R. 12.212 and 48 C.F.R. 227.7202-1 through 227.7202-4, if LICENSEE
hereunder is the U.S. Government or any agency or department thereof, the
SOFTWARE and the documentation are licensed hereunder (i) only as commercial
items, and (ii) with only those rights as granted to all other end users
20.1. Licensing Desmond for Non-Commercial Research
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