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7 Displaying Data in the Data Manager Editing Mass Values Table 44 lists the parameters and icons at the top of the Edit Masses experiment_number page. Table 44. Edit Masses experiment_number page parameters and icons Parameter Description Saves the edits that you made to the mass values. Does not save any of the edits that you made to the mass values, closes the Edit Masses experiment_number page, and returns you to the Data Manager. Fragmentation Method Specifies the fragmentation method. For more information on fragmentation methods, see “Fragmentation Methods” on page 9. The mass values are displayed in a series of columns in two areas, Precursor Mass List and Fragment Mass List, on the Edit Masses experiment_number page. Table 45 lists the columns in the Precursor Mass List area. Table 45. Precursor Mass List area parameters Parameter Description mz_monoisotopic Specifies the monoisotopic mass-to-charge ratio (m/z) value of the precursor ion. mz_average Specifies a column showing the average mass-to-charge ratio (m/z) value of the precursor ion. mass_monoisotopic Specifies the monoisotopic mass of the precursor ion. mass_average Specifies the average mass of the precursor ion. intensity Specifies the abundance of the precursor ion. id Specifies a unique (in each MS/MS experiment) ProSightPC-assigned numerical identification of the precursor ion. Table 46 lists the columns in the Fragment Mass List area. Table 46. Fragment Mass List area parameters (Sheet 1 of 2) 210 ProSightPC User Guide Parameter Description mz_monoisotopic Specifies the monoisotopic mass-to-charge ratio (m/z) value of the fragment ion. mz_average Specifies the average mass-to-charge ration (m/z) value of the fragment ion. mass_monoisotopic Specifies the monoisotopic mass of the fragment ion. Thermo Scientific